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Walking in the PPI network to identify the risky SNP of osteoporosis with decision tree algorithm

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成果类型:
期刊论文、会议论文
作者:
Yang, Jincai(杨进才);Gu, Huichao;Jiang, Xingpeng(蒋兴鹏);Huang, Qingyang;Hu, Xiaohua;...
通讯作者:
Shen, Xianjun
作者机构:
[Jiang, Xingpeng; Yang, Jincai; Shen, Xianjun; Hu, Xiaohua; Huang, Qingyang; Gu, Huichao] Cent China Normal Univ, Sch Comp Sci, Wuhan, Peoples R China.
通讯机构:
[Shen, Xianjun] C
Cent China Normal Univ, Sch Comp Sci, Wuhan, Peoples R China.
语种:
英文
关键词:
osteoporosis;GWAS;SNPs;associated genes;random walk;PPI network;ID3 decision tree algorithm
期刊:
2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM)
ISSN:
2156-1125
年:
2017
页码:
1283-1287
会议名称:
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
会议论文集名称:
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
会议时间:
December 2016
会议地点:
Shenzhen, China
会议主办单位:
[Yang, Jincai;Gu, Huichao;Jiang, Xingpeng;Huang, Qingyang;Hu, Xiaohua;Shen, Xianjun] Cent China Normal Univ, Sch Comp Sci, Wuhan, Peoples R China.
会议赞助商:
IEEE, IEEE Comp Soc, Natl Sci Fdn, Harbin Inst Technol
主编:
Tian, T Jiang, Q Liu, Y Burrage, K Song, J Wang, Y Hu, X Morishita, S Zhu, Q Wang, G
出版地:
10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS, CA 90720-1264 USA
出版者:
IEEE
ISBN:
978-1-5090-1612-9
基金类别:
National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [61532008, 31371275]
机构署名:
本校为第一且通讯机构
院系归属:
计算机学院
摘要:
While much progress has been made on the genetic analysis of osteoporosis in the past 20 years, there are a lot of genes and SNPs that are associated with osteoporosis through GWAS. In this paper, we aim to identify the risky SNPs associated with osteoporosis by algorithms based on the known osteoporosis GWAS-associated SNPs. The whole framework of our prediction method includes two steps: Firstly, we identify whether the associated genes of the suspected risky SNPs is osteoporosis GWAS-associated genes by the method of random walk algorithm on the PPI network of osteoporosis GWAS-associated g...

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