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Seq-BEL: Sequence-Based Ensemble Learning for Predicting Virus-Human Protein-Protein Interaction

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成果类型:
期刊论文、会议论文
作者:
Ma, Yingjun;He, Tingting;Tan, Yuting;Jiang, Xingpeng
通讯作者:
Jiang, Xingpeng(xpjiang@mail.ccnu.edu.cn)
作者机构:
[He, Tingting; Jiang, Xingpeng; Ma, Yingjun] Cent China Normal Univ, Sch Comp, Wuhan 430079, Hubei, Peoples R China.
[Ma, Yingjun] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Hubei, Peoples R China.
[He, Tingting; Jiang, Xingpeng] Cent China Normal Univ, Hubei Prov Key Lab Artificial Intelligence & Smar, Wuhan 430079, Hubei, Peoples R China.
[Tan, Yuting] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Peoples R China.
[Tan, Yuting] Hubei Key Lab Math Sci, Wuhan 430079, Hubei, Peoples R China.
通讯机构:
Central China Normal University, School of Computer, Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Hubei, Wuhan, China
语种:
英文
关键词:
Proteins;Viruses (medical);Feature extraction;Amino acids;Predictive models;Kernel;Computational modeling;Feature projection;neighborhood completion;network fusion;virus-host interaction;protein interaction
期刊:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
ISSN:
1545-5963
年:
2022
卷:
19
期:
3
页码:
1322-1333
会议名称:
18th Asia Pacific Bioinformatics Conference (APBC)
会议时间:
AUG 18-20, 2020
会议地点:
ELECTR NETWORK
会议主办单位:
[Ma, Yingjun;He, Tingting;Jiang, Xingpeng] Cent China Normal Univ, Sch Comp, Wuhan 430079, Hubei, Peoples R China.^[Ma, Yingjun] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Hubei, Peoples R China.^[He, Tingting;Jiang, Xingpeng] Cent China Normal Univ, Hubei Prov Key Lab Artificial Intelligence & Smar, Wuhan 430079, Hubei, Peoples R China.^[Tan, Yuting] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Peoples R China.^[Tan, Yuting] Hubei Key Lab Math Sci, Wuhan 430079, Hubei, Peoples R China.
出版地:
10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS, CA 90720-1314 USA
出版者:
IEEE COMPUTER SOC
基金类别:
National Key Research and Development Program of China (Grant Number: 2017YFC0909502) 10.13039/501100001809-National Natural Science Foundation of China (Grant Number: 61872157 and 61532008)
机构署名:
本校为第一机构
院系归属:
数学与统计学学院
计算机学院
摘要:
Infectious diseases are currently the most important and widespread health problem, and identifying viral infection mechanisms is critical for controlling diseases caused by highly infectious viruses. Because of the lack of non-interactive protein pairs and serious imbalance between positive and negative sample ratios, the supervised learning algorithm is not suitable for prediction. At the same time, due to the lack of information on viral proteins and significant dissimilarity in sequence, some ensemble learning models have poor generalization ability. In this paper, we propose a Sequence-Ba...

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