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An end-to-end framework for biomedical event trigger identification with hierarchical attention and adaptive cost learning

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成果类型:
期刊论文
作者:
Zhang, Jinyong;Fang, Dandan;Zhao, Weizhong*;Yang, Jincai*杨进才);Zou, Wen;...
通讯作者:
Zhao, Weizhong;Yang, Jincai
作者机构:
[Jiang, Xingpeng; Yang, Jincai; He, Tingting; Zhang, Jinyong; Zhao, Weizhong; Fang, Dandan; Zhao, WZ] Cent China Normal Univ, Sch Comp, Wuhan, Peoples R China.
[Zhao, Weizhong] Guangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China.
[Zou, Wen] Natl Ctr Toxicol Res, Div Bioinformat & Biostat, Jefferson, AR 72079 USA.
通讯机构:
[Zhao, WZ; Yang, JC] C
[Zhao, Weizhong] G
Cent China Normal Univ, Sch Comp, Wuhan, Peoples R China.
Guangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China.
语种:
英文
关键词:
biomedical event trigger identification;end-to-end model;graph convolutional network;syntactic dependency tree;hierarchical attention mechanism;adaptive cost learning
期刊:
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS
ISSN:
1748-5673
年:
2020
卷:
23
期:
3
页码:
189-212
基金类别:
National Key Research and Development Program of China [2017YFC0909502]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [61532008, 61872157]; Wuhan Science and Technology Program [2019010701011392]; Key Research Program of Central China Normal University [CCNU18JCXK05]; Fundamental Research Funds for the Central UniversitiesFundamental Research Funds for the Central Universities [CCNU19TD004]; Guangxi Key Laboratory of Trusted Software [kx201905]; Research Fund of Guangxi Key Lab of Multi-source Information Mining Security [MIMS19-02]
机构署名:
本校为第一且通讯机构
院系归属:
计算机学院
摘要:
As a prerequisite step in biomedical event extraction, event trigger identification has attracted growing attention in biomedical research. Existing approaches to biomedical event trigger identification have two major drawbacks: (1) each sentence in a biomedical document is handled separately, which ignores the global context; (2) they fail to treat the issue of imbalanced class which is induced by the sparseness of event triggers in biomedical documents. To improve the performance of biomedical event trigger identification, we propose a deep neural network-based framework which addresses effe...

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