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Identifying binary protein-protein interactions from affinity purification mass spectrometry data

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成果类型:
期刊论文
作者:
Zhang, Xiao-Fei;Le Ou-Yang;Hu, Xiaohua;Dai, Dao-Qing*
通讯作者:
Dai, Dao-Qing
作者机构:
[Zhang, Xiao-Fei] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Peoples R China.
[Dai, Dao-Qing; Le Ou-Yang] Sun Yat Sen Univ, Intelligent Data Ctr, Guangzhou 510275, Guangdong, Peoples R China.
[Dai, Dao-Qing; Le Ou-Yang] Sun Yat Sen Univ, Dept Math, Guangzhou 510275, Guangdong, Peoples R China.
[Hu, Xiaohua] Cent China Normal Univ, Sch Comp, Wuhan 430079, Peoples R China.
[Hu, Xiaohua] Drexel Univ, Coll Informat Sci & Technol, Philadelphia, PA 19104 USA.
通讯机构:
[Dai, Dao-Qing] S
Sun Yat Sen Univ, Intelligent Data Ctr, Xingang West Rd, Guangzhou 510275, Guangdong, Peoples R China.
语种:
英文
关键词:
Protein-protein interactions;Direct physical interactions;Scoring methods;Affinity purification mass spectrometry data
期刊:
BMC Genomics
ISSN:
1471-2164
年:
2015
卷:
16
期:
1
页码:
1-14
基金类别:
National Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [61402190, 11171354, 61375033]; Ministry of Education of ChinaMinistry of Education, China [20120171110016]; Natural Science Foundation of Guangdong ProvinceNational Natural Science Foundation of Guangdong Province [S2013020012796]; International Program Fund of 985 Project, Sun Yat-sen University; Program of Introducing Talents of Discipline to UniversitiesMinistry of Education, China - 111 Project [07042]; NSF IIPNational Science Foundation (NSF) [1160960, 1332024]; self-determined research funds of CCNU from the colleges' basic research and operation of MOE [CCNU15A05039]
机构署名:
本校为第一机构
院系归属:
数学与统计学学院
计算机学院
摘要:
Background: The identification of protein-protein interactions contributes greatly to the understanding of functional organization within cells. With the development of affinity purification-mass spectrometry (AP-MS) techniques, several computational scoring methods have been proposed to detect protein interactions from AP-MS data. However, most of the current methods focus on the detection of co-complex interactions and do not discriminate between direct physical interactions and indirect interactions. Consequently, less is known about the pre...

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