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Reconstructing Unrooted Phylogenetic Trees from Symbolic Ternary Metrics

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成果类型:
期刊论文
作者:
Grunewald, Stefan;Long, Yangjing*;Wu, Yaokun
通讯作者:
Long, Yangjing
作者机构:
[Grunewald, Stefan] Chinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, 320 Yue Yang Rd, Shanghai 200032, Peoples R China.
[Long, Yangjing] Cent China Normal Univ, Sch Math & Stat, Luoyu Rd 152, Wuhan 430079, Hubei, Peoples R China.
[Wu, Yaokun] Shanghai Jiao Tong Univ, Dept Math, Dongchuan Rd 800, Shanghai 200240, Peoples R China.
[Wu, Yaokun] Shanghai Jiao Tong Univ, MOE LSC, Dongchuan Rd 800, Shanghai 200240, Peoples R China.
通讯机构:
[Long, Yangjing] C
Cent China Normal Univ, Sch Math & Stat, Luoyu Rd 152, Wuhan 430079, Hubei, Peoples R China.
语种:
英文
关键词:
Symbolic ternary metric;Median vertex;Unrooted phylogenetic tree
期刊:
Bulletin of Mathematical Biology
ISSN:
0092-8240
年:
2018
卷:
80
期:
6
页码:
1563-1577
基金类别:
Acknowledgements We thank the anonymous referees for their helpful comments and suggestions. We thank Peter F. Stadler for suggesting to consider general median graphs and Zeying Xu for some useful comments. This work is supported by the NSFC (11671258) and STCSM (17690740800). YL acknowledges support of Postdoctoral Science Foundation of China (No. 2016M601576).
机构署名:
本校为通讯机构
院系归属:
数学与统计学学院
摘要:
Böcker and Dress (Adv Math 138:105–125, 1998) presented a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree T with leaf set X and a proper vertex coloring of its interior vertices, we can map every triple of three different leaves to the color of its median vertex. We characterize all ternary maps that can be obtained in this way in terms of 4- and 5-point conditions, and we show that the corresponding tree and its col...

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