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A multi-label learning framework for predicting antibiotic resistance genes via dual-view modeling

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成果类型:
期刊论文
作者:
Zhao, Weizhong;Luo, Shujie;Wu, Haifang;Jiang, Xingpeng;He, Tingting;...
通讯作者:
Zhao, WZ
作者机构:
[Wu, Haifang; Zhao, Weizhong; Zhao, WZ; He, Tingting; Jiang, Xingpeng; Luo, Shujie] Cent China Normal Univ, Sch Comp, Wuhan 430079, Hubei, Peoples R China.
[Hu, Xiaohua] Drexel Univ, Coll Comp & Informat, Philadelphia, PA 19104 USA.
[Zhao, Weizhong] Cent China Normal Univ, Natl Language Resources Monitoring & Res Ctr Netw, Wuhan 430079, Hubei, Peoples R China.
[Zhao, Weizhong] Guilin Univ Elect Technol, Guangxi Key Lab Trusted Software, Guilin, Peoples R China.
[Zhao, Weizhong] Guangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin, Peoples R China.
通讯机构:
[Zhao, WZ ] C
Cent China Normal Univ, Sch Comp, Wuhan 430079, Hubei, Peoples R China.
语种:
英文
关键词:
antibiotic resistance genes;multi-label learning;dual-view modeling mechanism
期刊:
BRIEFINGS IN BIOINFORMATICS
ISSN:
1467-5463
年:
2022
卷:
23
期:
3
基金类别:
The work is partially supported by the National Natural Science Foundation of China (No. 61532008, No. 61872157, and No. 61932008), the Wuhan Science and Technology Program (2019010701011392), the Key Research and Development Program of Hubei Province (2020BAB017), the Fundamental Research Funds for the Central Universities (CCNU19TD004), Research Fund of Guangxi Key Lab of Multi-source Information Mining & Security (MIMS19-02), and the Guangxi Key Laboratory of Trusted Software (No. kx201905). Authors are grateful to the anonymous reviewers for helpful comments.
机构署名:
本校为第一且通讯机构
院系归属:
计算机学院
摘要:
The increasing prevalence of antibiotic resistance has become a global health crisis. For the purpose of safety regulation, it is of high importance to identify antibiotic resistance genes (ARGs) in bacteria. Although culture-based methods can identify ARGs relatively more accurately, the identifying process is time-consuming and specialized knowledge is required. With the rapid development of whole genome sequencing technology, researchers attempt to identify ARGs by computing sequence similarity from public databases. However, these computational methods might fail to detect ARGs due to the ...

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