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Hessian regularization based symmetric nonnegative matrix factorization for clustering gene expression and microbiome data

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成果类型:
期刊论文
作者:
Ma, Yuanyuan;Hu, Xiaohua;He, Tingting(何婷婷);Jiang, Xingpeng*蒋兴鹏
通讯作者:
Jiang, Xingpeng
作者机构:
[Ma, Yuanyuan] Cent China Normal Univ, Sch Informat Management, Wuhan 430079, Peoples R China.
[Jiang, Xingpeng; He, Tingting; Hu, Xiaohua] Cent China Normal Univ, Sch Comp, Wuhan 430079, Peoples R China.
通讯机构:
[Jiang, Xingpeng] C
Cent China Normal Univ, Sch Comp, Wuhan 430079, Peoples R China.
语种:
英文
关键词:
*Data clustering;*Hessian regularization;*Laplacian regularization;*Symmetric nonnegative matrix factorization
期刊:
Methods
ISSN:
1046-2023
年:
2016
卷:
111
页码:
80-84
基金类别:
China Scholarship CouncilChina Scholarship Council; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [61532008]; International Cooperation Project of Hubei Province [2014BHE0017]; Self-determined Research Funds of CCNU from the Colleges' Basic Research and Operation of MOE [CCNU14A02008]; Fundamental Research Funds for the Central UniversitiesFundamental Research Funds for the Central Universities [CCNU16KFY04]
机构署名:
本校为第一且通讯机构
院系归属:
计算机学院
信息管理学院
摘要:
Nonnegative matrix factorization (NMF) has received considerable attention due to its interpretation of observed samples as combinations of different components, and has been successfully used as a clustering method. As an extension of NMF, Symmetric NMF (SNMF) inherits the advantages of NMF. Unlike NMF, however, SNMF takes a nonnegative similarity matrix as an input, and two lower rank nonnegative matrices (H, H-T) are computed as an output to approximate the original similarity matrix. Laplacian regularization has improved the clustering performance of NMF and SNMF. However, Laplacian regula...

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