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Identifying Gene Network Rewiring Based on Partial Correlation

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成果类型:
期刊论文
作者:
Tan, Yu-Ting;Ou-Yang, Le;Jiang, Xingpeng;Yan, Hong;Zhang, Xiao-Fei
通讯作者:
Zhang, XF
作者机构:
[Tan, Yu-Ting; Zhang, Xiao-Fei] Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Hubei, Peoples R China.
[Tan, Yu-Ting; Zhang, Xiao-Fei] Cent China Normal Univ, Hubei Key Lab Math Sci, Wuhan 430079, Hubei, Peoples R China.
[Ou-Yang, Le] Shenzhen Univ, Coll Informat Engn, Shenzhen 518060, Guangdong, Peoples R China.
[Ou-Yang, Le] Shenzhen Univ, Shenzhen Key Lab Media Secur, Shenzhen 518060, Guangdong, Peoples R China.
[Jiang, Xingpeng] Cent China Normal Univ, Sch Comp, Wuhan 430079, Hubei, Peoples R China.
通讯机构:
[Zhang, XF ] C
Cent China Normal Univ, Sch Math & Stat, Wuhan 430079, Hubei, Peoples R China.
Cent China Normal Univ, Hubei Key Lab Math Sci, Wuhan 430079, Hubei, Peoples R China.
语种:
英文
关键词:
Gene network rewiring;partial correlation;graphical model;fused lasso
期刊:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
ISSN:
1545-5963
年:
2022
卷:
19
期:
1
页码:
513-521
基金类别:
10.13039/501100001809-National Natural Science Foundation of China (Grant Number: 11871026, 61402190, 61602309 and 61532008) 10.13039/501100003819-Natural Science Foundation of Hubei province (Grant Number: 2018CFB521) 10.13039/501100012226-Fundamental Research Funds for the Central Universities (Grant Number: CCNU18TS026) 10.13039/501100017622-Shenzhen Research and Development program (Grant Number: JCYJ20170817095210760) Natural Science Foundation of SZU (Grant Number: 2017077) Science and Technology Program of Guangzhou (Grant Number: 201607010170) Hong Kong Research Grants Council (Grant Number: C1007-15G and 11200818)
机构署名:
本校为第一且通讯机构
院系归属:
数学与统计学学院
计算机学院
摘要:
It is an important task to learn how gene regulatory networks change under different conditions. Several Gaussian graphical model-based methods have been proposed to deal with this task by inferring differential networks from gene expression data. However, most existing methods define the differential networks as the difference of precision matrices, which may include false differential edges caused by the change of conditional variances. In addition, prior information about the condition-specific networks and the differential networks can be obtained from other domains. It is useful to incorp...

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