Since some devices on the latest developed 250 ALICE/PHOS Front-end electronics(FEE) system eards had been partly or completely damaged during lead-free soldering. To alleviate the influence on the performance of FEE system and to locate fault related FPGA accurately, we should find a method for locating fault of FEE system based on the deep study of FPGA configuration scheme. It emphasized on the problems such as JTAG configuration of mult-devices, PS configuration based on EPC series configuration devices and auto re-configuration of FPGA. ...